Resources for learning more#
Resource Name |
Link |
Brief description |
|---|---|---|
Discussion forum for bioimage analysis software |
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🌐 GloBIAS Bioimage Analyst Database |
Find the friendly local bioimage analyst near you! |
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🌐 Peter Bankhead’s Intro to Bioimage Analysis |
Guide for absolute beginners to image analysis, including embedded questions/answers, exercises with Python and ImageJ, and videos to check understanding |
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📖 Bioimage Data Analysis 43 |
A free online textbook introducing various topics by Bioimage Analysis experts, edited by Kota Miura |
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📄 Reproducible image handling and analysis 44 |
An article reviewing major pitfalls in image handling and how to avoid them and create reproducible analysis workflows |
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📄 Made to measure: an introduction to quantification in microscopy data |
An article describing several common classes of measurements made in microscopy data, as well as technical factors that may affect the results |
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An interactive guide to choosing the right metric for your scientific question |
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📄 A Hitchhiker’s guide through the bio-image analysis software universe 3 |
An article that gives guidance and a glossary of available image analysis software and packages |
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🌐 BioImage Informatics Index |
Repository platform for searching bioimage analysis tools and workflows based on the problem, method or software of choice |
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🎥 iBiology Bioimage Analysis video series |
Video series that introduces Bioimage analysis, including overviews of image processing, segmentation, tracking, making and interpreting measurements, tips and pitfalls |
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🌐 Bioimage ANalysis Desktop (BAND) |
Access to virtual desktops allowing access to bioimage analysis software from a browser |
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🌐 Galaxy Imaging Node |
A Galaxy node prepopulated with a number of open-source image analysis tools and workflows, making it easy to create and share reproducible FAIR workflows |
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🌐 Image Analysis Training Resources |
Image analysis traning resources collected by NEUBIAS, styled based on The Carpentries |
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🌐 Bioimage Analysis AwesomeList |
A curated AwesomeList of resources related to bioimage analysis |
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🌐 Bioimage Analysis Notebooks |
A collection of Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more |
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📄 Believing is seeing - the deceptive influence of bias in quantitative microscopy18 |
Thoughtful review on technological and especially psychological factors that can lead to biased microscopy results |